Difference between revisions of "Publications"

From BeerLab
Jump to navigation Jump to search
>Dlee
Line 14: Line 14:
  
 
* '''[http://www.ncbi.nlm.nih.gov/pubmed/21875935 Discriminative prediction of mammalian enhancers from DNA sequence.]''' Lee D, Karchin R, and Beer MA. 2011. Genome Research 21:2167-2180.
 
* '''[http://www.ncbi.nlm.nih.gov/pubmed/21875935 Discriminative prediction of mammalian enhancers from DNA sequence.]''' Lee D, Karchin R, and Beer MA. 2011. Genome Research 21:2167-2180.
 +
 +
* '''[http://www.ncbi.nlm.nih.gov/pubmed/21720494 Identification of Novel Phosphorylation Motifs Through an Integrative Computational and Experimental Analysis of the Human Phosphoproteome.]''' Amanchy R, Kandasamy K, Mathivanan S, Periaswamy B, Reddy R, Yoon WH, Joore J,
 +
Beer MA, Cope L, Pandey A. 2011.  J Proteomics Bioinform 4:22-35.
  
 
* '''[http://www.ncbi.nlm.nih.gov/pubmed/19253296 Identification of miR-21 targets in breast cancer cells using a quantitative proteomic approach.]''' Yang Y, Chaerkady R, Beer MA, Mendell JT, and Pandey A. 2009. Proteomics 9:1374-1384.
 
* '''[http://www.ncbi.nlm.nih.gov/pubmed/19253296 Identification of miR-21 targets in breast cancer cells using a quantitative proteomic approach.]''' Yang Y, Chaerkady R, Beer MA, Mendell JT, and Pandey A. 2009. Proteomics 9:1374-1384.

Revision as of 04:22, 2 December 2013

  • Enhanced Regulatory Sequence Prediction Using Gapped k-mer Features. Ghandi M*, Lee D*, Mohammad-Noori M, and Beer MA. 2013 (submitted)
  • Identification of predictive cis-regulatory elements using a discriminative objective function and dynamic search spaces. Karnik, R, and Beer MA. 2012. (submitted)

Beer MA, Cope L, Pandey A. 2011. J Proteomics Bioinform 4:22-35.