Difference between revisions of "Publications"
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| − | * Ghandi M, and Beer MA. 2012. '''Group Normalization for Genomic Data.''' PLoS ONE 7: e38695. [http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0038695] | + | * Ghandi M, and Beer MA. 2012. '''Group Normalization for Genomic Data.''' PLoS ONE 7: e38695. [http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0038695 Direct] |
| − | * Lee D, Karchin R, and Beer MA. 2011. '''Discriminative prediction of mammalian enhancers from DNA sequence.''' Genome Research 21: 2167 –2180. [http://www.ncbi.nlm.nih.gov/pubmed/21875935] | + | * Lee D, Karchin R, and Beer MA. 2011. '''Discriminative prediction of mammalian enhancers from DNA sequence.''' Genome Research 21: 2167 –2180. [http://www.ncbi.nlm.nih.gov/pubmed/21875935 Pubmed] |
| − | * Yang Y, Chaerkady R, Beer MA, Mendell JT, and Pandey A. 2009. '''Identification of miR-21 targets in breast cancer cells using a quantitative proteomic approach.''' PROTEOMICS 9: 1374–1384. [http://www.ncbi.nlm.nih.gov/pubmed/19253296] | + | * Yang Y, Chaerkady R, Beer MA, Mendell JT, and Pandey A. 2009. '''Identification of miR-21 targets in breast cancer cells using a quantitative proteomic approach.''' PROTEOMICS 9: 1374–1384. [http://www.ncbi.nlm.nih.gov/pubmed/19253296 Pubmed] |
| − | * Chang T-C, Zeitels LR, Hwang H-W, Chivukula RR, Wentzel EA, Dews M, Jung J, Gao P, Dang CV, Beer MA, et al. 2009. '''Lin-28B transactivation is necessary for Myc-mediated let-7 repression and proliferation.''' PNAS 106: 3384–3389. [http://www.ncbi.nlm.nih.gov/pubmed/19211792] | + | * Chang T-C, Zeitels LR, Hwang H-W, Chivukula RR, Wentzel EA, Dews M, Jung J, Gao P, Dang CV, Beer MA, et al. 2009. '''Lin-28B transactivation is necessary for Myc-mediated let-7 repression and proliferation.''' PNAS 106: 3384–3389. [http://www.ncbi.nlm.nih.gov/pubmed/19211792 Pubmed] |
| − | * McGaughey DM, Vinton RM, Huynh J, Al-Saif A, Beer MA, and McCallion AS. 2008. '''Metrics of sequence constraint overlook regulatory sequences in an exhaustive analysis at phox2b.''' Genome Research 18: 252 –260. [http://www.ncbi.nlm.nih.gov/pubmed/18071029] | + | * McGaughey DM, Vinton RM, Huynh J, Al-Saif A, Beer MA, and McCallion AS. 2008. '''Metrics of sequence constraint overlook regulatory sequences in an exhaustive analysis at phox2b.''' Genome Research 18: 252 –260. [http://www.ncbi.nlm.nih.gov/pubmed/18071029 Pubmed] |
| − | * Chang T-C, Wentzel EA, Kent OA, Ramachandran K, Mullendore M, Lee KH, Feldmann G, Yamakuchi M, Ferlito M, Lowenstein CJ, et al. 2007. '''Transactivation of miR-34a by p53 Broadly Influences Gene Expression and Promotes Apoptosis.''' Molecular Cell 26: 745–752. [http://www.ncbi.nlm.nih.gov/pubmed/17540599] | + | * Chang T-C, Wentzel EA, Kent OA, Ramachandran K, Mullendore M, Lee KH, Feldmann G, Yamakuchi M, Ferlito M, Lowenstein CJ, et al. 2007. '''Transactivation of miR-34a by p53 Broadly Influences Gene Expression and Promotes Apoptosis.''' Molecular Cell 26: 745–752. [http://www.ncbi.nlm.nih.gov/pubmed/17540599 Pubmed] |
| − | * Katz DJ, Beer MA, Levorse JM, and Tilghman SM. 2005. '''Functional Characterization of a Novel Ku70/80 Pause Site at the H19/Igf2 Imprinting Control Region.''' Mol Cell Biol 25: 3855–3863. [http://www.ncbi.nlm.nih.gov/pubmed/15870260] | + | * Katz DJ, Beer MA, Levorse JM, and Tilghman SM. 2005. '''Functional Characterization of a Novel Ku70/80 Pause Site at the H19/Igf2 Imprinting Control Region.''' Mol Cell Biol 25: 3855–3863. [http://www.ncbi.nlm.nih.gov/pubmed/15870260 Pubmed] |
| − | * Pritsker M, Liu Y-C, Beer MA, and Tavazoie S. 2004. '''Whole-Genome Discovery of Transcription Factor Binding Sites by Network-Level Conservation.''' Genome Research 14: 99–108. [http://www.ncbi.nlm.nih.gov/pubmed/14672978] | + | * Pritsker M, Liu Y-C, Beer MA, and Tavazoie S. 2004. '''Whole-Genome Discovery of Transcription Factor Binding Sites by Network-Level Conservation.''' Genome Research 14: 99–108. [http://www.ncbi.nlm.nih.gov/pubmed/14672978 Pubmed] |
| − | * Beer MA, Tavazoie S. 2004. '''Predicting Gene Expression from Sequence.''' Cell 117: 185–198. [http://www.ncbi.nlm.nih.gov/pubmed/15084257] | + | * Beer MA, Tavazoie S. 2004. '''Predicting Gene Expression from Sequence.''' Cell 117: 185–198. [http://www.ncbi.nlm.nih.gov/pubmed/15084257 Pubmed] |
Revision as of 13:47, 21 August 2012
- Ghandi M, and Beer MA. 2012. Group Normalization for Genomic Data. PLoS ONE 7: e38695. Direct
- Lee D, Karchin R, and Beer MA. 2011. Discriminative prediction of mammalian enhancers from DNA sequence. Genome Research 21: 2167 –2180. Pubmed
- Yang Y, Chaerkady R, Beer MA, Mendell JT, and Pandey A. 2009. Identification of miR-21 targets in breast cancer cells using a quantitative proteomic approach. PROTEOMICS 9: 1374–1384. Pubmed
- Chang T-C, Zeitels LR, Hwang H-W, Chivukula RR, Wentzel EA, Dews M, Jung J, Gao P, Dang CV, Beer MA, et al. 2009. Lin-28B transactivation is necessary for Myc-mediated let-7 repression and proliferation. PNAS 106: 3384–3389. Pubmed
- McGaughey DM, Vinton RM, Huynh J, Al-Saif A, Beer MA, and McCallion AS. 2008. Metrics of sequence constraint overlook regulatory sequences in an exhaustive analysis at phox2b. Genome Research 18: 252 –260. Pubmed
- Chang T-C, Wentzel EA, Kent OA, Ramachandran K, Mullendore M, Lee KH, Feldmann G, Yamakuchi M, Ferlito M, Lowenstein CJ, et al. 2007. Transactivation of miR-34a by p53 Broadly Influences Gene Expression and Promotes Apoptosis. Molecular Cell 26: 745–752. Pubmed
- Katz DJ, Beer MA, Levorse JM, and Tilghman SM. 2005. Functional Characterization of a Novel Ku70/80 Pause Site at the H19/Igf2 Imprinting Control Region. Mol Cell Biol 25: 3855–3863. Pubmed
- Pritsker M, Liu Y-C, Beer MA, and Tavazoie S. 2004. Whole-Genome Discovery of Transcription Factor Binding Sites by Network-Level Conservation. Genome Research 14: 99–108. Pubmed
- Beer MA, Tavazoie S. 2004. Predicting Gene Expression from Sequence. Cell 117: 185–198. Pubmed