Difference between revisions of "Publications"

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* '''Enhanced Regulatory Sequence Prediction Using Gapped k-mer Features.''' Ghandi M*, Lee D*, Mohammad-Noori M, and Beer MA. 2013 (submitted)
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* '''Identification of predictive cis-regulatory elements using a discriminative objective function and dynamic search spaces.''' Karnik, R, and Beer MA. 2012. (submitted)
 
* '''Identification of predictive cis-regulatory elements using a discriminative objective function and dynamic search spaces.''' Karnik, R, and Beer MA. 2012. (submitted)
  
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* '''[http://www.ncbi.nlm.nih.gov/pubmed/23861010 Robust k-mer Frequency Estimation Using Gapped k-mers.]''' Ghandi M, Mohammad-Noori M, and Beer MA. 2013. Journal of Mathematical Biology. (Epub ahead of print)
 
* '''[http://www.ncbi.nlm.nih.gov/pubmed/23861010 Robust k-mer Frequency Estimation Using Gapped k-mers.]''' Ghandi M, Mohammad-Noori M, and Beer MA. 2013. Journal of Mathematical Biology. (Epub ahead of print)
  
* '''[http://www.ncbi.nlm.nih.gov/pubmed/23771147 kmer-SVM: a web server for identifying predictive regulatory sequence features in genomic datasets.]''' Fletez-Brant C<sup>*</sup>, Lee D<sup>*</sup>, McCallion AS and Beer MA. 2013. Nucleic Acids Research 41: W544–W556.
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* '''[http://www.ncbi.nlm.nih.gov/pubmed/23771147 kmer-SVM: a web server for identifying predictive regulatory sequence features in genomic datasets.]''' Fletez-Brant C*, Lee D*, McCallion AS and Beer MA. 2013. Nucleic Acids Research 41: W544–W556.
  
 
* '''[http://www.ncbi.nlm.nih.gov/pubmed/23019145 Integration of ChIP-seq and Machine Learning Reveals Enhancers and a Predictive Regulatory Sequence Vocabulary in Melanocytes.]''' Gorkin DU, Lee D, Reed X, Fletez-Brant C, Blessling SL, Loftus SK, Beer MA, Pavan WJ, and McCallion AS. 2012. Genome Research 22:2290-2301.
 
* '''[http://www.ncbi.nlm.nih.gov/pubmed/23019145 Integration of ChIP-seq and Machine Learning Reveals Enhancers and a Predictive Regulatory Sequence Vocabulary in Melanocytes.]''' Gorkin DU, Lee D, Reed X, Fletez-Brant C, Blessling SL, Loftus SK, Beer MA, Pavan WJ, and McCallion AS. 2012. Genome Research 22:2290-2301.

Revision as of 14:25, 21 July 2013

  • Enhanced Regulatory Sequence Prediction Using Gapped k-mer Features. Ghandi M*, Lee D*, Mohammad-Noori M, and Beer MA. 2013 (submitted)
  • Identification of predictive cis-regulatory elements using a discriminative objective function and dynamic search spaces. Karnik, R, and Beer MA. 2012. (submitted)