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| − | '''[https://retractionwatch.com/2018/03/20/over-a-dozen-board-members-resigned-after-a-journal-refused-to-retract-a-paper-today-its-retracted/ Scientific Reports finally retracts paper plagiarizing our gkm-SVM paper.]''' '''[http://www.bmj.com/content/360/bmj.k1386 related article'''
| + | [http://www.ee.surrey.ac.uk/Teaching/Unix/ Unix Tutorial] |
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| − | Don't do this: '''[http://www.sixthtone.com/news/1001156/19-academics-resign-from-journal-over-alleged-plagiarism/ plagiarism1]'''
| + | [http://www.beerlab.org/p300enhancer P300 enhancers (Genome Research 2011)] |
| − | '''[http://retractionwatch.com/2017/10/17/21-faculty-johns-hopkins-threaten-resign-board-journal-doesnt-retract-paper/ plagiarism2]'''
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| − | '''[http://retractionwatch.com/2017/10/10/board-member-resigns-journal-handling-paper-accused-plagiarism/ plagiarism3]'''
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| − | '''[http://retractionwatch.com/2017/11/07/17-johns-hopkins-researchers-resign-protest-ed-board-nature-journal/ plagiarism4]'''
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| − | '''[http://www.the-scientist.com/?articles.view/articleNo/50888/title/Mass-Resignation-from-Scientific-Reports-s-Editorial-Board/ plagiarism5]'''
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| − | '''[http://www.jhunewsletter.com/2017/02/16/professor-beer-awarded-1-8-million-nih-grant/ JHU Newsletter article on our ENCODE grant by Anna Chen]'''
| + | [http://kmersvm.beerlab.org/ kmer-SVM server (Nucleic Acids Research 2013)] |
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| − | '''[https://www.genome.gov/27567592/2017-release-nih-to-expand-critical-catalog-for-genomics-research/ NHGRI press release on next phase of ENCODE project consortium]'''
| + | [http://www.beerlab.org/gkmsvm gkm-SVM software (PLOS Computational Biology 2014)] |
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| − | '''[http://www.bme.jhu.edu/news-events/news-highlights.php?id=592 Beer Lab awarded NIH ENCODE grant]'''
| + | [http://www.beerlab.org/deltasvm deltaSVM software (Nature Genetics 2015)] |
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| − | '''[http://www.nature.com/nature/journal/v538/n7624/full/538275a.html Our computational work featured in Nature news article on "The Dark Side of the Human Genome"]'''
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| − | '''[http://www.beerlab.org/gkmsvm New R package for gkmSVM and deltaSVM released]'''
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| − | '''[http://www.bme.jhu.edu/about/awards-achievements.php?id=201612 BME Associate Professors Beer and Karchin named top performers at CAGI4]'''
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| − | '''[https://genomeinterpretation.org/content/4-eQTL-causal_SNPs gkmSVM among top-scoring methods for CAGI eQTL prediction challenge] '''
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| − | '''[http://www.iscb.org/recomb-regsysgen2015-submissions/recomb-regsysgen2015-top-papers-reading-papers deltaSVM paper voted Top 10 in Regulatory Genomics 2015] '''
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| − | '''[http://www.nature.com/ng/journal/v47/n8/full/ng.3364.html Nature Genetics News & Views article on our deltaSVM paper]'''
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| − | '''[http://www.hopkinsmedicine.org/news/media/releases/vulnerabilities_in_genomes_dimmer_switches_should_shed_light_on_hundreds_of_complex_diseases Nature Genetics paper on impact of regulatory variants]'''
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| − | '''[http://www.newsweek.com/humans-and-mice-are-both-more-similar-and-different-previously-thought-285635 Newsweek article on Mouse ENCODE paper]'''
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| − | '''[http://www.hopkinsmedicine.org/news/media/releases/scientists_map_mouse_genomes_mission_control_centers Mouse ENCODE Consortium paper in Nature]'''
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| − | '''[http://www.bme.jhu.edu/news-events/news-highlights.php?id=412 Beer Lab awarded NIH grant for regulatory contributions to disease. ]'''
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| − | '''[http://www.bme.jhu.edu/news-events/news-highlights.php?id=360 kmer-SVM Genome Research paper voted Top 10 in Regulatory Genomics.] '''
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| − | '''[http://www.hopkinsmedicine.org/institute_basic_biomedical_sciences/news_events/Announcements/2013_04_YID.html Dongwon Lee awarded Young Investigator Day Award.] '''
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